Pass the Health

Cozy Up with These Apple Cinnamon Thumbprint Cookies

If you love cozy flavors wrapped in a soft, chewy cookie, then these Apple Cinnamon Thumbprint Cookies are perfect for you. I adore this recipe because it brings together warm cinnamon, nutmeg, and sweet apple jelly in a gluten-free cookie that feels like a hug in every bite. They’re ideal for breakfast treats, afternoon snacks, or sharing with family during the holidays. Plus, the drizzle of maple icing on top adds a lovely touch of sweetness without being overpowering.

Why Apple Cinnamon Thumbprint Cookies Are a Nourishing Treat

These cookies combine wholesome ingredients for a snack that’s satisfying and a bit indulgent without guilt. Almond flour provides healthy fats and protein while keeping the recipe gluten-free. Spices like cinnamon and nutmeg add antioxidants and anti-inflammatory benefits. Apple jelly adds natural fruit sweetness and a burst of flavor, while walnuts supply crunch and heart-healthy fats. Using maple syrup as a sweetener keeps the sugar content natural and less processed. This recipe is a delicious way to enjoy a treat while sticking to clean eating goals. To learn more about the benefits of maple syrup, check out this Maple Syrup Nutrition Facts from the USDA.

Ingredients for Apple Cinnamon Thumbprint Cookies

1 1/2 cups almond flour
1/2 cup oat flour (or whole wheat/all-purpose flour)
1/2 teaspoon baking soda
1 teaspoon cinnamon
1/4 teaspoon nutmeg
1/4 cup unsalted butter (or solid coconut oil)
1/4 cup maple syrup
2 tablespoons apple butter (optional)
1 teaspoon vanilla extract
1 egg white
1/2 cup finely chopped walnuts
1/4 cup apple jelly

For the maple drizzle:

1/2 cup powdered sugar
2 tablespoons maple syrup
1/2 teaspoon water

How to Make Apple Cinnamon Thumbprint Cookies — Step by Step

Whisk together almond flour, oat flour, baking soda, cinnamon, and nutmeg in a large bowl; set aside.
In a stand mixer, cream butter (or coconut oil), maple syrup, apple butter, and vanilla extract until smooth.
Gradually add the flour mixture and mix until a dough forms. Cover and chill for 30 minutes.
Preheat oven to 350°F and line baking sheets with parchment paper or silicone mats.
Roll dough into 20 small balls. Set up an assembly line with egg white in one bowl, walnuts in another, and the baking sheet.
Dip each ball into egg white, then roll in walnuts, shaking off excess. Place on baking sheet.
Press a small well into each cookie with a measuring spoon or your finger. Fill wells with apple jelly.
Bake for 15–18 minutes until edges turn light brown. Cool on pan for 5 minutes, then transfer to a wire rack.
Whisk powdered sugar, maple syrup, and water to make icing. Drizzle over cooled cookies. Enjoy!

Preparation Details

Prep Time: 10 minutes
Cook Time: 15 minutes
Total Time: 55 minutes (includes chilling)
Servings: 20 cookies

These cookies are great for batch baking and storing for snacks or breakfasts throughout the week.

Nutritional Information Per Cookie

Calories: 119 kcal
Protein: 2.6 g
Carbohydrates: 10.9 g
Fat: 7.8 g
Saturated Fat: 1.9 g
Fiber: 1.4 g
Sugar: 6.6 g
Sodium: 35.2 mg

A balanced treat with healthy fats, fiber, and natural sweetness that fits into clean eating plans.

Nora’s Tips for Perfect Apple Cinnamon Thumbprint Cookies

Use room-temperature butter for easier mixing, or solid coconut oil for a dairy-free option.
Chill the dough well to prevent spreading and keep cookies thick and soft.
Try other nut toppings like pecans or almonds for variety.
Swap apple jelly with apricot or berry jam for a flavor twist.
Store in an airtight container for up to 4 days to keep cookies soft and fresh.

If you want more wholesome baked goods, don’t miss recipes like my healthy banana oatmeal breakfast cookies or crustless quiche.

Give These Apple Cinnamon Thumbprint Cookies a Try and Share Your Feedback!

These Apple Cinnamon Thumbprint Cookies make a perfect treat any time of day. I encourage you to bake a batch and share your favorite ways to enjoy them. Don’t forget to post your photos on Instagram and tag me—I love seeing your kitchen creations!

Did you try this Apple Cinnamon Thumbprint Cookies recipe? I’d love to hear how they turned out or see your beautiful cookies in the comments or on Instagram! For more delicious recipes, check out my 1-Bowl Baked Oatmeal recipe.